Gene: Ubxn1 ENSMUSG00000071655

Description

UBX domain protein 1 [Source:MGI Symbol;Acc:MGI:1289301]

Gene Synonyms

4930455J02Rik, D19Ertd721e, T25529

Location

Chromosome 19: 8,848,860-8,853,227 forward strand.

GRCm39:CM001012.3

About this gene

This gene has 4 transcripts (splice variants), 196 orthologues, 5 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000238036.2	Ubxn1-204	1291	297aa	ENSMUSP00000157971.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29553	Q922Y1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000096255.7	Ubxn1-201	1127	262aa	ENSMUSP00000093974.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A498WFS2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000166407.9	Ubxn1-202	1033	297aa	ENSMUSP00000133250.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29553	Q922Y1	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000237220.2	Ubxn1-203	2847	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-

Gene: Ubxn1 ENSMUSG00000071655

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Gene: Ubxn1 ENSMUSG00000071655

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