Gene: Clcf1 ENSMUSG00000040663

Description

cardiotrophin-like cytokine factor 1 [Source:MGI Symbol;Acc:MGI:1930088]

Gene Synonyms

Bsf3, CLC, NNT-1/BSF-3

Location

Chromosome 19: 4,264,292-4,273,544 forward strand.

GRCm39:CM001012.3

About this gene

This gene has 5 transcripts (splice variants), 186 orthologues, 2 paralogues and is associated with 16 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000046506.7	Clcf1-201	1847	225aa	ENSMUSP00000045562.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS29423	Q9QZM3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000235355.2	Clcf1-205	380	40aa	ENSMUSP00000157886.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A494BA42	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSMUST00000138090.2	Clcf1-204	1878	44aa	ENSMUSP00000118157.2	Nonsense mediated decay		D6RIL9	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000126457.2	Clcf1-202	646	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENSMUST00000132305.2	Clcf1-203	3550	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Gene: Clcf1 ENSMUSG00000040663

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Gene: Clcf1 ENSMUSG00000040663

Summary

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