Gene: Pf4 ENSMUSG00000029373

Description

platelet factor 4 [Source:MGI Symbol;Acc:MGI:1888711]

Gene Synonyms

Cxcl4, Pf4, Scyb4

Location

Chromosome 5: 90,920,294-90,921,242 forward strand.

GRCm39:CM000998.3

About this gene

This gene has 3 transcripts (splice variants), 56 orthologues, 8 paralogues and is associated with 2 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000031320.8	Pf4-201	588	105aa	ENSMUSP00000031320.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS19416	Q3TVN6 Q9Z126	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000202625.2	Pf4-203	411	77aa	ENSMUSP00000143818.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0J9YTR7	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENSMUST00000201990.2	Pf4-202	360	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Gene: Pf4 ENSMUSG00000029373

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Gene: Pf4 ENSMUSG00000029373

Summary

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