Gene: Ptp4a1 ENSMUSG00000026064

Description

protein tyrosine phosphatase 4a1 [Source:MGI Symbol;Acc:MGI:1277096]

Gene Synonyms

Prl-1

Location

Chromosome 1: 30,979,383-30,988,390 reverse strand.

GRCm39:CM000994.3

About this gene

This gene has 3 transcripts (splice variants), 256 orthologues, 8 paralogues and is associated with 37 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000232841.2	Ptp4a1-203	4236	173aa	ENSMUSP00000156862.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS14858	B9EKL6 Q63739	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSMUST00000153681.2	Ptp4a1-202	3072	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000130934.2	Ptp4a1-201	476	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Gene: Ptp4a1 ENSMUSG00000026064

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Gene: Ptp4a1 ENSMUSG00000026064

Summary

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