Gene: Spns3 ENSMUSG00000020798

Description

SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative) [Source:MGI Symbol;Acc:MGI:1924827]

Gene Synonyms

9830002I17Rik

Location

Chromosome 11: 72,385,745-72,441,332 reverse strand.

GRCm39:CM001004.3

About this gene

This gene has 3 transcripts (splice variants), 196 orthologues, 2 paralogues and is associated with 12 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	Flags
ENSMUST00000092940.13	Spns3-202	2080	514aa	ENSMUSP00000090617.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS24987	Q9D232	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000021154.7	Spns3-201	1804	492aa	ENSMUSP00000021154.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9D232-2	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENSMUST00000155774.2	Spns3-203	4019	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Gene: Spns3 ENSMUSG00000020798

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Gene: Spns3 ENSMUSG00000020798

Summary

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