Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: GABPB1 ENSGALG00010017451

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Description

GA binding protein transcription factor beta subunit 1 [Source:NCBI gene (formerly Entrezgene);Acc:415453]

Gene Synonyms

GABPB2

Location

Primary_assembly 10: 10,877,799-10,897,330 forward strand.

bGalGal1.mat.broiler.GRCg7b:CM028491.1

About this gene

This gene has 5 transcripts (splice variants), 152 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010042132.1	GABPB1-204	3032	355aa	ENSGALP00010024672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSGALT00010042154.1	GABPB1-202	2965	399aa	ENSGALP00010024691.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSGALT00010042157.1	GABPB1-201	2931	381aa	ENSGALP00010024694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSGALT00010042147.1	GABPB1-203	2838	391aa	ENSGALP00010024686.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSGALT00010042135.1	GABPB1-205	1796	383aa	ENSGALP00010024675.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1NXL3	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,

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Summary

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