Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
- Variant table
- Variant image
- Structural variants
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: COL12A1 ENSGALG00010004096

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Description

collagen type XII alpha 1 chain [Source:NCBI gene (formerly Entrezgene);Acc:395875]

Location

Primary_assembly 3: 80,499,070-80,599,905 forward strand.

bGalGal1.mat.broiler.GRCg7b:CM028484.1

About this gene

This gene has 4 transcripts (splice variants), 212 orthologues and 11 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSGALT00010009597.1	COL12A1-203	10582	3122aa	ENSGALP00010005636.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1L1RPW4	-
ENSGALT00010009589.1	COL12A1-202	10456	3065aa	ENSGALP00010005635.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5P8I8	APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSGALT00010009577.1	COL12A1-204	10136	3059aa	ENSGALP00010005629.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSGALT00010009585.1	COL12A1-201	9500	3065aa	ENSGALP00010005631.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1NX22	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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