collagen type XI alpha 2 chain [Source:HGNC Symbol;Acc:HGNC:2187]
DFNA13, DFNB53, HKE5
Scaffold HSCHR6_MHC_MCF_CTG1: 4,598,639-4,628,455 reverse strand.
GRCh38:GL000254.2
View this gene on the primary assembly.
This gene has 6 transcripts (splice variants), 1 gene allele and is associated with 9 phenotypes.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq Match | Flags |
|---|---|---|---|---|---|---|---|---|---|
| ENST00000549885.2 | COL11A2-240 | 6425 | 1736aa | ENSP00000448931.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0G2JL35 | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000447349.5 | COL11A2-236 | 6209 | 1650aa | ENSP00000388309.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | Q4VXY6 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000552473.4 | COL11A2-241 | 6104 | 1629aa | ENSP00000446870.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0G2JL78 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000452730.5 | COL11A2-238 | 2099 | 624aa | ENSP00000388775.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A0G2JI07 | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, | |
| ENST00000447741.6 | COL11A2-237 | 1194 | 290aa | ENSP00000400813.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | P13942-9 | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, | |
| ENST00000496392.1 | COL11A2-239 | 1984 | No protein | - | Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined | - | - | TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, |
