Transcript: ENSDART00000192021.1 hmgcra-203

Description

3-hydroxy-3-methylglutaryl-CoA reductase a [Source:ZFIN;Acc:ZDB-GENE-040401-2]

Gene Synonyms

hmgcr1, hmgcr1a, hmgra, si:ch211-129a6.5, zgc:136576

Location

Chromosome 5: 50,972,485-50,992,775 reverse strand.

About this transcript

This transcript has 19 exons, is annotated with 30 domains and features, is associated with 662 variant alleles and maps to 234 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000052734.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000097460.5	hmgcra-201	3895	884aa	ENSDARP00000088231.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9JSZ0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000192021.1	hmgcra-203	4304	912aa	ENSDARP00000153502.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QHL5	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000149553.2	hmgcra-202	2930	884aa	ENSDARP00000124862.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9JSZ0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 19, Coding exons: 18, Transcript length: 4,304 bps, Translation length: 912 residues

Version

ENSDART00000192021.1

Type

Protein coding

Annotation Method

Annotation produced by the Ensembl genebuild.

Transcript: ENSDART00000192021.1 hmgcra-203

Summary

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Transcript: ENSDART00000192021.1 hmgcra-203

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