Transcript: ENSDART00000166649.2 srp54-201

Description

signal recognition particle 54 [Source:ZFIN;Acc:ZDB-GENE-040426-818]

Gene Synonyms

zgc:55842, zgc:85713

Location

About this transcript

This transcript has 17 exons, is annotated with 19 domains and features, is associated with 342 variant alleles and maps to 156 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166649.2	srp54-201	2315	504aa	ENSDARP00000139136.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZVN5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000169892.2	srp54-202	1543	504aa	ENSDARP00000131757.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZVN5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000172697.2	srp54-203	767	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 17, Coding exons: 15, Transcript length: 2,315 bps, Translation length: 504 residues

Version

ENSDART00000166649.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.