Transcript: ENSDART00000158747.2 pdgfab-201

Description

platelet-derived growth factor alpha polypeptide b [Source:ZFIN;Acc:ZDB-GENE-060929-124]

Gene Synonyms

wu:fc32c12, zgc:153249

Location

About this transcript

This transcript has 7 exons, is annotated with 15 domains and features, is associated with 1451 variant alleles and maps to 162 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000158747.2	pdgfab-201	2286	230aa	ENSDARP00000140240.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IXE1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000166322.2	pdgfab-204	1181	47aa	ENSDARP00000134014.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IF94	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000158815.2	pdgfab-202	876	55aa	ENSDARP00000135004.1	Nonsense mediated decay	A0A0R4IHM5	-
ENSDART00000162102.2	pdgfab-203	579	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 7, Coding exons: 6, Transcript length: 2,286 bps, Translation length: 230 residues

Version

ENSDART00000158747.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.