Transcript: ENSDART00000154002.2 txndc16-202

Description

thioredoxin domain containing 16 [Source:ZFIN;Acc:ZDB-GENE-100712-1]

Gene Synonyms

si:ch211-84m6.4

Location

About this transcript

This transcript has 5 exons, is associated with 634 variant alleles and maps to 60 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000105064.6	txndc16-201	5365	804aa	ENSDARP00000095835.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FC06	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000154002.2	txndc16-202	659	143aa	ENSDARP00000128212.1	Nonsense mediated decay	X1WDB3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 659 bps, Translation length: 143 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000154002.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.