Transcript: ENSDART00000153194.2 si:dkey-38p12.3-201

Description

si:dkey-38p12.3 [Source:ZFIN;Acc:ZDB-GENE-060810-103]

Gene Synonyms

im:7158374

Location

About this transcript

This transcript has 16 exons, is annotated with 35 domains and features, is associated with 586 variant alleles and maps to 215 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000153194.2	si:dkey-38p12.3-201	4238	937aa	ENSDARP00000127303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F1T2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000187875.1	si:dkey-38p12.3-202	4799	516aa	ENSDARP00000150898.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RQW8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 16, Coding exons: 15, Transcript length: 4,238 bps, Translation length: 937 residues

Version

ENSDART00000153194.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.