Transcript: ENSDART00000152786.3 si:dkey-182i3.8-203

Description

si:dkey-182i3.8 [Source:ZFIN;Acc:ZDB-GENE-030131-4134]

Gene Synonyms

fc74h01, wu:fc74h01, zmp:0000000783

Location

Chromosome 15: 23,528,010-23,533,101 forward strand.

About this transcript

This transcript has 5 exons, is annotated with 86 domains and features, is associated with 9 variant alleles and maps to 138 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000075834.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000152786.3	si:dkey-182i3.8-203	2826	642aa	ENSDARP00000126827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GEB4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000182309.1	si:dkey-182i3.8-204	4846	528aa	ENSDARP00000156293.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QSF9	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000152523.2	si:dkey-182i3.8-202	847	282aa	ENSDARP00000126669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GDW2	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000152422.2	si:dkey-182i3.8-201	422	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 5, Coding exons: 5, Transcript length: 2,826 bps, Translation length: 642 residues

Version

ENSDART00000152786.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENSDART00000152786.3 si:dkey-182i3.8-203

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Transcript: ENSDART00000152786.3 si:dkey-182i3.8-203

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