Transcript: ENSDART00000148520.3 syne1b-202

Description

spectrin repeat containing, nuclear envelope 1b [Source:ZFIN;Acc:ZDB-GENE-071218-4]

Location

About this transcript

This transcript has 143 exons, is annotated with 269 domains and features, is associated with 7223 variant alleles and maps to 578 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000148520.3	syne1b-202	27036	8710aa	ENSDARP00000124184.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EZ30	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000091828.6	syne1b-201	26133	8710aa	ENSDARP00000086261.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7EZ30	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000148604.2	syne1b-203	870	113aa	ENSDARP00000124669.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W2N1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 143, Coding exons: 142, Transcript length: 27,036 bps, Translation length: 8,710 residues

Version

ENSDART00000148520.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.