Transcript: ENSDART00000146906.2 si:ch1073-184j22.1-202

Description

si:ch1073-184j22.1 [Source:ZFIN;Acc:ZDB-GENE-081104-74]

Location

Chromosome 2: 5,380,858-5,389,696 forward strand.

About this transcript

This transcript has 5 exons, is associated with 358 variant alleles and maps to 161 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000055498.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000139762.3	si:ch1073-184j22.1-201	963	208aa	ENSDARP00000119819.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JLI7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000146906.2	si:ch1073-184j22.1-202	805	103aa	ENSDARP00000114356.1	Nonsense mediated decay	F1QIQ7	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 805 bps, Translation length: 103 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000146906.2

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000146906.2 si:ch1073-184j22.1-202

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENSDART00000146906.2 si:ch1073-184j22.1-202

Summary

About Us

Get help

Our sister sites

Follow us