Transcript: ENSDART00000143040.4 slc22a18-202

Description

solute carrier family 22 member 18 [Source:ZFIN;Acc:ZDB-GENE-051120-165]

Gene Synonyms

zgc:123168

Location

About this transcript

This transcript has 10 exons, is annotated with 23 domains and features, is associated with 5 variant alleles and maps to 177 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000143040.4	slc22a18-202	1845	401aa	ENSDARP00000120263.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QCN1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000134174.2	slc22a18-201	755	136aa	ENSDARP00000112647.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QD56	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000173498.2	slc22a18-203	445	99aa	ENSDARP00000142690.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A1D5NS80	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 1,845 bps, Translation length: 401 residues

Version

ENSDART00000143040.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.