Transcript: ENSDART00000139609.2 lmx1a-202

Description

LIM homeobox transcription factor 1, alpha [Source:ZFIN;Acc:ZDB-GENE-041014-332]

Gene Synonyms

si:ch211-260g14.3

Location

About this transcript

This transcript has 5 exons, is annotated with 16 domains and features, is associated with 403 variant alleles and maps to 135 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000019059.9	lmx1a-201	1374	366aa	ENSDARP00000006532.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RI65	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139609.2	lmx1a-202	615	147aa	ENSDARP00000123281.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NUH5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000146292.3	lmx1a-203	534	118aa	ENSDARP00000119321.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6PDS9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 5, Coding exons: 4, Transcript length: 615 bps, Translation length: 147 residues

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENSDART00000139609.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.