Transcript: ENSDART00000139598.4 col5a1-201

Description

procollagen, type V, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-041105-6]

Gene Synonyms

si:dkey-87m23.1

Location

Chromosome 21: 6,556,635-6,725,780 forward strand.

About this transcript

This transcript has 65 exons, is annotated with 69 domains and features, is associated with 2964 variant alleles and maps to 452 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000012593.13 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000139598.4	col5a1-201	9581	2011aa	ENSDARP00000120854.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F6NPA4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000159645.2	col5a1-202	4662	1554aa	ENSDARP00000138783.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IRG2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary

Statistics

Exons: 65, Coding exons: 65, Transcript length: 9,581 bps, Translation length: 2,011 residues

Incomplete CDS

5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Version

ENSDART00000139598.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Transcript: ENSDART00000139598.4 col5a1-201

Summary

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Transcript: ENSDART00000139598.4 col5a1-201

Summary

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