Transcript: ENSDART00000100727.6 osbpl9-201

Description

oxysterol binding protein-like 9 [Source:ZFIN;Acc:ZDB-GENE-061110-103]

Gene Synonyms

zgc:154069

Location

Chromosome 8: 16,615,798-16,674,584 reverse strand.

About this transcript

This transcript has 24 exons, is annotated with 23 domains and features, is associated with 1203 variant alleles and maps to 220 oligo probes.

Gene

This transcript is a product of gene ENSDARG00000069298.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000100727.6	osbpl9-201	3278	733aa	ENSDARP00000091500.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0JMN8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000191982.1	osbpl9-206	3063	720aa	ENSDARP00000149759.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8Q9E0	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000135319.2	osbpl9-202	927	239aa	ENSDARP00000117148.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9C3S3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000146774.2	osbpl9-205	206	52aa	ENSDARP00000115516.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A9C3S2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000145803.3	osbpl9-204	766	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000142803.2	osbpl9-203	693	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 24, Coding exons: 24, Transcript length: 3,278 bps, Translation length: 733 residues

Version

ENSDART00000100727.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENSDART00000100727.6 osbpl9-201

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Transcript: ENSDART00000100727.6 osbpl9-201

Summary

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