Transcript: ENSDART00000079528.3 ilk-201

Description

integrin-linked kinase [Source:ZFIN;Acc:ZDB-GENE-040426-1435]

Gene Synonyms

loc, lost-contact, main squeeze, msq, zgc:65842, zilk

Location

About this transcript

This transcript has 13 exons, is annotated with 25 domains and features, is associated with 666 variant alleles and maps to 281 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000079528.3	ilk-201	3200	452aa	ENSDARP00000073983.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PHD6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000192401.1	ilk-203	6066	452aa	ENSDARP00000153672.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6PHD6	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000145587.2	ilk-202	803	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 13, Coding exons: 12, Transcript length: 3,200 bps, Translation length: 452 residues

Version

ENSDART00000079528.3

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.