Transcript: ENSDART00000064439.6 nup43-201

Description

nucleoporin 43 [Source:ZFIN;Acc:ZDB-GENE-040426-2533]

Gene Synonyms

zgc:77032

Location

About this transcript

This transcript has 8 exons, is annotated with 13 domains and features, is associated with 448 variant alleles and maps to 191 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000064439.6	nup43-201	1562	372aa	ENSDARP00000064438.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5RFW3	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000152165.2	nup43-202	664	221aa	ENSDARP00000127090.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GF25	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000152586.3	nup43-203	552	184aa	ENSDARP00000127050.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GEY6	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 8, Coding exons: 8, Transcript length: 1,562 bps, Translation length: 372 residues

Version

ENSDART00000064439.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.