Transcript: ENSDART00000055500.5 ptx4-201

Description

pentraxin 4, long [Source:ZFIN;Acc:ZDB-GENE-120215-70]

Gene Synonyms

fb77c07, si:ch211-157c3.5, wu:fb77c07

Location

About this transcript

This transcript has 6 exons, is annotated with 18 domains and features, is associated with 12 variant alleles and maps to 94 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000055500.5	ptx4-201	2369	531aa	ENSDARP00000055499.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RAX6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000151334.2	ptx4-202	452	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 6, Coding exons: 4, Transcript length: 2,369 bps, Translation length: 531 residues

Version

ENSDART00000055500.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.