Transcript: ENSDART00000046066.9 capn1a-201

Description

calpain 1, (mu/I) large subunit a [Source:ZFIN;Acc:ZDB-GENE-040426-1263]

Gene Synonyms

capn1, zgc:63788

Location

About this transcript

This transcript has 22 exons, is annotated with 32 domains and features, is associated with 1261 variant alleles and maps to 228 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000046066.9	capn1a-201	2983	704aa	ENSDARP00000046065.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A6G0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000160472.2	capn1a-202	4481	704aa	ENSDARP00000130846.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8A6G0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 22, Coding exons: 21, Transcript length: 2,983 bps, Translation length: 704 residues

Version

ENSDART00000046066.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.