Transcript: ENSDART00000042895.6 cdh17-201

Description

cadherin 17, LI cadherin (liver-intestine) [Source:ZFIN;Acc:ZDB-GENE-030910-3]

Gene Synonyms

cb903, fb65d02, wu:fb65d02

Location

About this transcript

This transcript has 19 exons, is annotated with 49 domains and features, is associated with 17 variant alleles and maps to 245 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000042895.6	cdh17-201	3326	868aa	ENSDARP00000042894.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RD80	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000188870.1	cdh17-203	3168	868aa	ENSDARP00000154473.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1RD80	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000123187.3	cdh17-202	634	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Summary

Statistics

Exons: 19, Coding exons: 18, Transcript length: 3,326 bps, Translation length: 868 residues

Version

ENSDART00000042895.6

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.