Transcript: ENSDART00000010019.7 upf3b-201

Description

UPF3B regulator of nonsense mediated mRNA decay [Source:ZFIN;Acc:ZDB-GENE-040426-1630]

Gene Synonyms

zgc:174674, zgc:66390

Location

About this transcript

This transcript has 10 exons, is annotated with 21 domains and features, is associated with 252 variant alleles and maps to 308 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000010019.7	upf3b-201	2301	467aa	ENSDARP00000011948.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QNX7	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133248.2	upf3b-202	751	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

Summary

Statistics

Exons: 10, Coding exons: 10, Transcript length: 2,301 bps, Translation length: 467 residues

Version

ENSDART00000010019.7

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.