Transcript: ENSDART00000002493.9 tnfrsf1a-201

Description

tumor necrosis factor receptor superfamily, member 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2252]

Gene Synonyms

TNF Receptor 1 (TR1), TNFR1, wu:fj65b10, zgc:85914

Location

About this transcript

This transcript has 10 exons, is annotated with 27 domains and features, is associated with 120 variant alleles and maps to 167 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000002493.9	tnfrsf1a-201	2509	389aa	ENSDARP00000011163.8	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QQS0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000178443.2	tnfrsf1a-202	4373	389aa	ENSDARP00000143967.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QQS0	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 10, Coding exons: 9, Transcript length: 2,509 bps, Translation length: 389 residues

Version

ENSDART00000002493.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.