Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: slco1f3 ENSDARG00000105691

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Description

solute carrier organic anion transporter family, member 1F3 [Source:ZFIN;Acc:ZDB-GENE-080212-5]

Gene Synonyms

Oatp1f3, zgc:175035

Location

Chromosome 4: 77,322,543-77,332,032 reverse strand.

GRCz11:CM002888.2

About this gene

This gene has 3 transcripts (splice variants), 21 orthologues and 12 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000168628.3	slco1f3-202	2058	588aa	ENSDARP00000135999.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0N4SU37	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000172025.2	slco1f3-203	2057	559aa	ENSDARP00000137208.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0N4SU58	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000162325.2	slco1f3-201	1764	587aa	ENSDARP00000135867.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KTW5	-

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Summary

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