Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: abcc1 ENSDARG00000104719

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Description

ATP-binding cassette, sub-family C (CFTR/MRP), member 1 [Source:ZFIN;Acc:ZDB-GENE-050517-15]

Gene Synonyms

si:dkeyp-72e1.5

Location

Chromosome 3: 36,713,477-36,743,962 forward strand.

GRCz11:CM002887.2

About this gene

This gene has 4 transcripts (splice variants), 201 orthologues and 15 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000161897.2	abcc1-201	6178	1518aa	ENSDARP00000130505.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IC81	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000189952.1	abcc1-204	4497	1498aa	ENSDARP00000157625.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QUE8	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000181105.1	abcc1-203	4125	1333aa	ENSDARP00000155836.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8RY78	-
ENSDART00000170707.2	abcc1-202	530	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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