Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: vps54 ENSDARG00000102960

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Description

VPS54 subunit of GARP complex [Source:ZFIN;Acc:ZDB-GENE-081022-176]

Gene Synonyms

zgc:195037

Location

Chromosome 1: 55,006,945-55,044,371 reverse strand.

GRCz11:CM002885.2

About this gene

This gene has 4 transcripts (splice variants) and 206 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000170001.3	vps54-204	8053	1031aa	ENSDARP00000138816.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IQF8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSDART00000165505.2	vps54-202	3235	998aa	ENSDARP00000131039.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IA59	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000167536.2	vps54-203	2510	799aa	ENSDARP00000133406.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IIL8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000161029.2	vps54-201	1589	170aa	ENSDARP00000136610.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IME0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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