Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: arhgap39 ENSDARG00000100007

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Description

Rho GTPase activating protein 39 [Source:ZFIN;Acc:ZDB-GENE-041014-247]

Gene Synonyms

si:ch211-281p13.1

Location

Chromosome 20: 52,389,858-52,447,533 forward strand.

GRCz11:CM002904.2

About this gene

This gene has 3 transcripts (splice variants), 199 orthologues and 2 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166651.2	arhgap39-202	2820	939aa	ENSDARP00000132870.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0G2KKK6	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000185863.1	arhgap39-203	2763	920aa	ENSDARP00000157070.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8S009	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000163100.2	arhgap39-201	365	121aa	ENSDARP00000135037.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IJK5	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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