Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: si:ch211-154o6.3 ENSDARG00000099846

.

Description

si:ch211-154o6.3 [Source:ZFIN;Acc:ZDB-GENE-030131-1030]

Gene Synonyms

fb57e01, si:ch1073-327m5.1, wu:fb57e01

Location

Chromosome 16: 21,698,980-21,741,877 forward strand.

GRCz11:CM002900.2

About this gene

This gene has 7 transcripts (splice variants), 302 orthologues and 13 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000162371.2	si:ch211-154o6.3-203	1196	316aa	ENSDARP00000141972.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IYI5	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000181036.1	si:ch211-154o6.3-207	5910	521aa	ENSDARP00000145171.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8PW74	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000172504.2	si:ch211-154o6.3-206	736	168aa	ENSDARP00000136198.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IPI5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000157752.2	si:ch211-154o6.3-201	702	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000165281.2	si:ch211-154o6.3-204	856	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000160346.2	si:ch211-154o6.3-202	693	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-
ENSDART00000167764.2	si:ch211-154o6.3-205	617	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

.

Summary

.

.