Gene: col17a1b ENSDARG00000079011

Description

collagen, type XVII, alpha 1b [Source:ZFIN;Acc:ZDB-GENE-030131-7145]

Gene Synonyms

col17a1, col17a1a, fk89a06, si:ch211-223p8.6, wu:fk89a06

Location

Chromosome 13: 24,750,078-24,779,692 forward strand.

GRCz11:CM002897.2

About this gene

This gene has 3 transcripts (splice variants), 15 orthologues, 52 paralogues and is associated with 5 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000134102.3	col17a1b-202	4533	1368aa	ENSDARP00000121297.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R619	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000021053.10	col17a1b-201	2349	663aa	ENSDARP00000022516.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R7W0	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000137074.2	col17a1b-203	510	170aa	ENSDARP00000113743.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QTH6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Gene: col17a1b ENSDARG00000079011

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Gene: col17a1b ENSDARG00000079011

Summary

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