Gene: itgb1a ENSDARG00000071863

Description

integrin, beta 1a [Source:ZFIN;Acc:ZDB-GENE-060803-2]

Gene Synonyms

beta1-1

Location

GRCz11:CM002908.2

About this gene

This gene has 2 transcripts (splice variants), 215 orthologues, 13 paralogues and is associated with 12 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000039700.7	itgb1a-201	3414	798aa	ENSDARP00000039699.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QG85	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000177356.2	itgb1a-202	6015	802aa	ENSDARP00000143985.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A286Y9W0	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

Summary