Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
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Pathway
Molecular interactions
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External references
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ID History
- Gene history

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Gene: nelfa ENSDARG00000061411

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Description

negative elongation factor complex member A [Source:ZFIN;Acc:ZDB-GENE-030131-6400]

Gene Synonyms

fi75f03, whsc2, wu:fi75f03

Location

Chromosome 7: 24,491,966-24,508,677 forward strand.

GRCz11:CM002891.2

About this gene

This gene has 4 transcripts (splice variants) and 205 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000087568.8	nelfa-201	2228	542aa	ENSDARP00000082002.5	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FFE0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000172290.3	nelfa-204	5472	543aa	ENSDARP00000130626.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IBP1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000149994.2	nelfa-203	784	261aa	ENSDARP00000124577.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W2X2	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000149881.4	nelfa-202	639	165aa	ENSDARP00000124962.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F8W5V5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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