Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: mrpl4 ENSDARG00000058824

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Description

mitochondrial ribosomal protein L4 [Source:NCBI gene;Acc:553771]

Gene Synonyms

si:dkey-23f9.3, zgc:110034, zgmrpl4

Location

Chromosome 11: 11,319,141-11,331,146 reverse strand.

GRCz11:CM002895.2

About this gene

This gene has 5 transcripts (splice variants) and 196 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000081765.6	mrpl4-201	1051	302aa	ENSDARP00000076204.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q503X2	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000160247.2	mrpl4-202	1142	301aa	ENSDARP00000134997.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4ILL2	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000162612.2	mrpl4-204	640	45aa	ENSDARP00000140283.1	Nonsense mediated decay	A0A0R4ISU6	-
ENSDART00000173019.2	mrpl4-205	151	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-
ENSDART00000160776.2	mrpl4-203	477	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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