Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ccl38.1 ENSDARG00000041919

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Description

chemokine (C-C motif) ligand 38, duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-041014-320]

Gene Synonyms

CCL-chr20g, CCL38aa, Dr20_WGA1544_1_1446828, dr-chr20-CCL7-40.0%-DN, si:dkey-217m5.3

Location

Chromosome 20: 39,332,579-39,333,799 reverse strand.

GRCz11:CM002904.2

About this gene

This gene has 2 transcripts (splice variants), 145 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142164.3	ccl38.1-201	670	103aa	ENSDARP00000113398.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5SPQ9	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000153720.3	ccl38.1-202	321	106aa	ENSDARP00000128783.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	X1WEY1	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,

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Summary

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