Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: ntm ENSDARG00000018065

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Description

neurotrimin [Source:ZFIN;Acc:ZDB-GENE-060421-6020]

Gene Synonyms

zgc:136455

Location

Chromosome 10: 29,963,518-30,589,172 forward strand.

GRCz11:CM002894.2

About this gene

This gene has 5 transcripts (splice variants), 267 orthologues, 4 paralogues and is associated with 4 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000113912.4	ntm-203	1128	375aa	ENSDARP00000100022.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FH58	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000011317.11	ntm-201	1084	305aa	ENSDARP00000006040.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QZF9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000099964.6	ntm-202	1022	317aa	ENSDARP00000090736.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7F9I8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000182990.1	ntm-205	1002	333aa	ENSDARP00000149816.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B7ZV58	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000136398.2	ntm-204	432	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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