Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: lpgat1 ENSDARG00000013542

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Description

lysophosphatidylglycerol acyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2906]

Gene Synonyms

fc21c12, fj66b10, si:dkey-30h14.2, wu:fc21c12, wu:fj66b10, zgc:112278

Location

Chromosome 20: 13,781,779-13,874,340 forward strand.

GRCz11:CM002904.2

About this gene

This gene has 4 transcripts (splice variants), 204 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000142999.3	lpgat1-202	3529	426aa	ENSDARP00000115456.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5TZG1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000115329.3	lpgat1-201	3179	371aa	ENSDARP00000098779.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q4KMD5	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000152497.2	lpgat1-204	802	249aa	ENSDARP00000127068.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GF03	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000152471.2	lpgat1-203	373	41aa	ENSDARP00000126808.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	R4GE95	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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