Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: zgc:55558 ENSDARG00000013161

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Description

zgc:55558 [Source:ZFIN;Acc:ZDB-GENE-040426-740]

Location

Chromosome 3: 16,662,209-16,683,623 forward strand.

GRCz11:CM002887.2

About this gene

This gene has 5 transcripts (splice variants), 76 orthologues and 47 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000013816.8	zgc:55558-201	2183	187aa	ENSDARP00000022638.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZUL8	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000190556.1	zgc:55558-205	6158	187aa	ENSDARP00000149487.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZUL8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000100961.6	zgc:55558-202	1390	187aa	ENSDARP00000091733.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZUL8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000185646.1	zgc:55558-204	565	187aa	ENSDARP00000150653.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q7ZUL8	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000141875.2	zgc:55558-203	383	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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