Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: sgce ENSDARG00000012138

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Description

sarcoglycan, epsilon [Source:ZFIN;Acc:ZDB-GENE-030724-1]

Gene Synonyms

zgc:92318

Location

Chromosome 19: 41,038,668-41,069,701 reverse strand.

GRCz11:CM002903.2

About this gene

This gene has 4 transcripts (splice variants), 206 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000111982.4	sgce-201	1716	414aa	ENSDARP00000099762.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q6DHH1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000193142.1	sgce-204	1457	405aa	ENSDARP00000156933.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QQB6	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000151120.2	sgce-203	821	154aa	ENSDARP00000125827.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	I3ISF0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000131865.3	sgce-202	695	122aa	ENSDARP00000113758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LW88	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,

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Summary

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