Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: lpcat1 ENSDARG00000011506

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Description

lysophosphatidylcholine acyltransferase 1 [Source:NCBI gene;Acc:555969]

Gene Synonyms

aytl2, si:dkey-261i16.4, zgc:158232

Location

Chromosome 19: 28,291,062-28,334,164 forward strand.

GRCz11:CM002903.2

About this gene

This gene has 6 transcripts (splice variants), 180 orthologues and 6 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000103855.6	lpcat1-201	2050	517aa	ENSDARP00000094631.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LWG4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000163382.3	lpcat1-206	2027	517aa	ENSDARP00000133893.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q1LWG4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000139433.4	lpcat1-202	798	236aa	ENSDARP00000120048.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	J9JI14	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,
ENSDART00000151752.3	lpcat1-205	820	48aa	ENSDARP00000125633.1	Nonsense mediated decay	I3IRX4	-
ENSDART00000150932.2	lpcat1-204	668	130aa	ENSDARP00000125791.1	Nonsense mediated decay	I3ISB9	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000140038.2	lpcat1-203	505	No protein	-	Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript	-	-

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Summary

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