Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: col16a1 ENSDARG00000009194

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Description

collagen, type XVI, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-060503-351]

Gene Synonyms

si:dkey-27a13.1

Location

Chromosome 19: 38,473,758-38,611,814 reverse strand.

GRCz11:CM002903.2

About this gene

This gene has 4 transcripts (splice variants), 160 orthologues and 52 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000151958.2	col16a1-202	5413	1580aa	ENSDARP00000126509.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7DYI0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000136775.3	col16a1-201	538	151aa	ENSDARP00000116089.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1R6B4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000152010.2	col16a1-203	313	105aa	ENSDARP00000126433.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	K7DYA5	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENSDART00000152017.2	col16a1-204	752	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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