Gene: sf1 ENSDARG00000008188

Description

splicing factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2492]

Gene Synonyms

wu:fc09f06, znf162

Location

Chromosome 7: 22,809,905-22,820,816 forward strand.

GRCz11:CM002891.2

About this gene

This gene has 5 transcripts (splice variants), 185 orthologues, 7 paralogues and is associated with 10 phenotypes.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000166900.3	sf1-205	2837	663aa	ENSDARP00000130303.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IBT0	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000126037.4	sf1-202	2510	565aa	ENSDARP00000105365.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QP64	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000143455.4	sf1-204	403	93aa	ENSDARP00000116837.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E9QF75	-
ENSDART00000020212.11	sf1-201	2718	165aa	ENSDARP00000026464.9	Nonsense mediated decay	E9QHL8	-
ENSDART00000139321.2	sf1-203	428	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

Gene: sf1 ENSDARG00000008188

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Gene: sf1 ENSDARG00000008188

Summary

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