Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: tsr1 ENSDARG00000007744

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Description

TSR1 ribosome maturation factor [Source:ZFIN;Acc:ZDB-GENE-030131-3762]

Gene Synonyms

fc52b09, wu:fc52b09, zgc:123319

Location

Chromosome 15: 25,635,326-25,656,331 forward strand.

GRCz11:CM002899.2

About this gene

This gene has 4 transcripts (splice variants), 223 orthologues and 1 paralogue.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000052645.8	tsr1-201	2653	836aa	ENSDARP00000052644.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	E7FCX4	APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000162240.2	tsr1-204	2616	822aa	ENSDARP00000136648.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A0R4IKX4	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSDART00000135409.3	tsr1-202	1801	476aa	ENSDARP00000116271.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1Q594	-
ENSDART00000149256.2	tsr1-203	1547	351aa	ENSDARP00000123769.1	Nonsense mediated decay	F8W570	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,

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Summary

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