Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: actn1 ENSDARG00000007219

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Description

actinin, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-081113-4]

Location

Chromosome 13: 36,321,088-36,391,502 reverse strand.

GRCz11:CM002897.2

About this gene

This gene has 5 transcripts (splice variants), 194 orthologues and 61 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000140243.3	actn1-205	3981	902aa	ENSDARP00000123299.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JHU4	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000100217.5	actn1-201	3664	902aa	ENSDARP00000090990.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B8JHU4	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000133740.3	actn1-202	3658	902aa	ENSDARP00000120755.1	Nonsense mediated decay	B8JHU4	-
ENSDART00000133858.2	actn1-203	993	209aa	ENSDARP00000123185.1	Nonsense mediated decay	F1QER4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000135741.2	actn1-204	932	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron	-	-

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Summary

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