Gene: scn8aa ENSDARG00000005775

Description

sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]

Gene Synonyms

Nav1.6, scn8a, zscn4

Location

GRCz11:CM002907.2

About this gene

This gene has 2 transcripts (splice variants), 263 orthologues, 32 paralogues and is associated with 21 phenotypes.

Transcripts

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000022042.10	scn8aa-201	6814	1949aa	ENSDARP00000024690.9	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q9DF53	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P5,
ENSDART00000191870.1	scn8aa-202	6804	1949aa	ENSDARP00000155447.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	A0A2R8QLY1	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,

Summary