Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Molecular function
- GO: Biological process
- GO: Cellular component
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: gtf2e1 ENSDARG00000000542

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Description

general transcription factor IIE, polypeptide 1, alpha [Source:ZFIN;Acc:ZDB-GENE-041210-221]

Gene Synonyms

si:ch211-194d6.2

Location

Chromosome 9: 27,688,274-27,720,612 reverse strand.

GRCz11:CM002893.2

About this gene

This gene has 5 transcripts (splice variants) and 210 orthologues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSDART00000000566.10	gtf2e1-201	6265	447aa	ENSDARP00000001151.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5SQE1	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000161068.2	gtf2e1-205	2211	447aa	ENSDARP00000135822.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5SQE1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000138386.2	gtf2e1-202	1738	447aa	ENSDARP00000119282.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	Q5SQE1	APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENSDART00000146860.2	gtf2e1-203	827	259aa	ENSDARP00000118122.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1QBP7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENSDART00000148195.2	gtf2e1-204	648	99aa	ENSDARP00000113390.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	B0UYP3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

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Summary

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