Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: VAMP2 ENSBTAG00000054934

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Description

vesicle associated membrane protein 2 [Source:NCBI gene (formerly Entrezgene);Acc:282116]

Location

Primary_assembly 19: 27,793,921-27,800,583 reverse strand.

ARS-UCD1.3:CM008186.2

About this gene

This gene has 4 transcripts (splice variants), 163 orthologues and 10 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000108220.1	VAMP2-204	811	176aa	ENSBTAP00000085193.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENSBTAT00000089963.1	VAMP2-202	1682	113aa	ENSBTAP00000088325.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2,
ENSBTAT00000085421.2	VAMP2-201	796	156aa	ENSBTAP00000059351.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	P63026	APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENSBTAT00000107244.1	VAMP2-203	438	118aa	ENSBTAP00000083333.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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