Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
Ontologies
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: PTPN22 ENSBTAG00000019617

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Description

protein tyrosine phosphatase non-receptor type 22 [Source:VGNC Symbol;Acc:VGNC:33536]

Location

Primary_assembly 3: 29,504,936-29,576,961 forward strand.

ARS-UCD1.3:CM008170.2

About this gene

This gene has 6 transcripts (splice variants), 125 orthologues and 37 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	UniProt Match	Flags
ENSBTAT00000135838.1	PTPN22-203	3530	808aa	ENSBTAP00000095841.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT1,
ENSBTAT00000135486.1	PTPN22-204	3530	808aa	ENSBTAP00000096243.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	APPRIS P4: Where the APPRIS core modules are unable to choose a clear principal CDS and there is more than one variant with a distinct (but consecutive) CCDS identifiers, APPRIS selects the longest CCDS isoform as the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P4,
ENSBTAT00000110399.1	PTPN22-205	3458	784aa	ENSBTAP00000099773.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000123654.1	PTPN22-206	3397	775aa	ENSBTAP00000089489.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-
ENSBTAT00000026136.7	PTPN22-202	2490	795aa	ENSBTAP00000026136.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	F1N6L3	-
ENSBTAT00000088360.1	PTPN22-201	642	179aa	ENSBTAP00000087805.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	-

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Summary

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